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Codon-optimized versions of both genes were ordered from DNA 2.0 (Menlo Park, CA).
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In figure 2, both C. albicans and C. dubliniensis genes were ordered according to the C. albicans genome.
All genes were ordered based on relative transcriptional or translational activity in IPF compared to control myofibroblasts, as described in Materials and Methods.
Synthetic npnM gene was ordered from GeneArt, and synthetic npnA genes were ordered from Integrated DNA Technologies IDTT).
The genes were ordered according to the clustering analysis.
Next all expressed genes were ordered by chromosome and position.
First of all, co-linear genes were ordered according to the syntenic regions in B. distachyon.
Genes were ordered according to their genomic position, taken from the Saccharomyces Genome Database (SGD; [ 43]).
Within each phase cluster, genes were ordered using hierarchical clustering implemented in R for display purposes.
Only two previously physically mapped genes were ordered differently than expected.
The lists of significantly differently expressed genes were ordered by direction and fold change.
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