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We filtered both gene expression data sets for differentially expressed genes using the published filtering criteria used in the prior studies (i.e. a threshold of 1.5-fold change and p < 0.05 for the Thompson et al. (2012) data, and a 2-fold change and p < 0.01 for Whitney et al. (2014); [ 40, 44]).
There has been considerable interest recently in the application of bagging in the classification of both gene expression data [7 10] and protein-abundance mass spectrometry data [11 16].
167 Illumina genotyping has both gene expression data and enzyme activity data.
Both gene expression data and pathological evaluation showed that Epitype D is infiltrated by immune cells.
A similar mixed model was run for both gene expression data and plant performance data.
One data set comprises both gene expression data and metabolomics data for 69 metabolites in GSMN-TB.
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We went on to examine the PI3K signatures in breast cancer cell lines, where we had both gene-expression data (from Neve et al. [ 45]) and proteomic data (from our group) on the same set of 40 cell lines.
mAPC is different from traditional clustering methods in terms of constructing co-regulated gene modules by utilizing both microarray gene expression data and motif binding information.
This indicates that the RNA-seq and microarray platforms both provide gene expression data that can be used for meaningful biological interpretation.
This technique, which we have designated "Hyperclustering," allows both the gene expression data and various other forms of annotation to be represented as a single heat map, effectively illustrating functional relationships among genes.
Both the gene expression data and genome-wide SNP analysis have been deposited in the NCBIs Gene Expression Omnibus [ 53] as a SuperSeries with accession number GSE32979 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi acc=GSE32979).nih.gov/geo/query/acc.cgi acc=GSE32979
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