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Although we calculated both estimates, we use the percentage of gene coverage based on the longest unigene for comparisons to other platforms.
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Both for rho and BEAST estimates, we used a fossil-based substitution rate estimate of 0.716 × 10−/site/year, which is specific for the 1.5-Mb MSY region here analyzed (Trombetta B, unpublished data) obtained by calibration with two archeologically dated specimens (Fu et al. 2014; Lazaridis et al. 2014).
If a study presented both an adjusted and unadjusted effect estimate, we used the fully adjusted estimate when creating the forest plots.
For estimating ρ, we use both the regression model (5) estimate and, as a sensitivity analysis, the correlation coefficient of the residuals from the regressions in (3) and (4).
If either β =+∞ or α = −∞ or both, we use the estimates of Propositions 4.1 and 4.4 to establish that the integral converges and that the corresponding terms at the left-hand side vanish in the limit β→ ∞ and/or α → −∞.
Thus in both calculations we used conservative estimates of the rates.
In order to account for the wide variation, we used both estimates (Table 1).
We used estimate (412).
Immigration and emigration are both estimated using a survey (International Passenger Survey).
Dietary intake estimates were very similar for both approaches; therefore, we report intake estimates using one-half LOD only.
We made estimates using robust standard errors.
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