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First, the proportion of neurons belonging in common to both clusters was calculated, followed by calculating the overlap seen by chance, when random neurons were assigned to equal sized clusters.
Similar(59)
The distance between each surrogate parent and the medoid of both clusters is calculated as the average absolute deviation of the elements in the row of the symmetrical matrix from the corresponding element in the medoid vector.
Additionally, mean probability of assignment to each of the clusters was calculated separately for populations from both drainages.
The binding energy per atom of clusters was calculated according to the Eq. 1.
The binding energy per atom of Al n Si m clusters was calculated according to the Eq. 5.
The correlation between the Jaccard's similarity and the cophenetic coefficients for the clusters was calculated.
The optimal number of discrete clusters was calculated to be equal to the len/30 where len is the number of residues in the protein [20].
The same surface areas of preparations (ten/condition) were compared in control and treated conditions and the mean number of clusters was calculated (Figure 3B, d).
For each n, the average self-similarity (avg-s) of the clusters was calculated.
The number of unigenes corresponding to the number of clusters was calculated using CLOBB (Table 1).
The significance of correlated clusters was calculated as for functional MRI.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com