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Pair-wise linkage disequilibrium was evaluated by two linkage disequilibrium parameters, Lewontin's D2 [24] and r2 [25], which were both calculated in haploview (http://www.broad.mit.edu/mpg/haploview/) [26].
Genetic variation was expressed by gene diversity (He), which is gene variability corrected for sample size, and Nei's D [ 82], both calculated in the program SPAGeDi version 1.3.
The cumulative incidences of death due to breast cancer and due to causes other than breast cancer are both calculated in the same analysis, and shown in separate figures.
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Second, D, though potentially unbiased with respect to information size calculations, could come with a greater variance than I2 when both are calculated in the same set of meta-analyses.
Two of the types of geospatially relevant analyses that the VI-Suite can conduct are shadow and sky view factor (SVF) mapping, and both are calculated in a similar manner.
Geometric mean levels (GMLs; 95% CI) and proportion (percentage) of patients with putative protective antibody levels ≥1 mg/L for both serotypes, calculated in different treatment groups, were compared with results 4 to 6 weeks after vaccination.
Contrast recovery (CR) and background variability (BV) were both calculated as in the NEMA standard [21].
Both BP and HR were calculated in absolute values and in percent changes from the highest value of each cardiovascular parameter in each individual animal.
Least squares means (LSmean) for both traits were calculated in SAS version 9.1 for Windows (SAS Institute Inc., Cary, NC, USA) and used as the phenotypic values in all models (Table S1).
Both tests were calculated in treefinder using 10,000 replicates.
Testing was carried out twice on each toe, and a mean of both values was calculated in volts.
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