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With an accompanying browser of the transcriptome under Pi stress, a deeper understanding of the structural and functional features of both annotated and unannotated Pi stress-responsive transcripts can provide useful information in improving Pi acquisition and utilization in rice and other cereal crops.
First, this allowed us to identify both annotated and unannotated exons.
These genomic features included annotated genes, and both annotated and unannotated pseudogenes.
Finally, putative open reading frames (ORFs) were searched in both annotated and unannotated contigs using OrfPredictor (v2.3) [ 82].
The recent CAFA2 challenge [ 8] had exactly the same setup, except that the list of 100,000 target proteins consisted of both annotated and unannotated proteins.
Then, we computed the empirical cumulative distribution of all the scores equal or larger than c, considering both annotated and unannotated genes.
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ETotal number of transcripts includes both the annotated and unannotated transcripts.
This method had the potential of identifying both annotated genes and unannotated ORFs that encode homologues.
We will address a very large and diverse set of world languages using a broad spectrum of approaches, over large annotated and unannotated datasets of both text and speech.
In options "genes" and "union", annotated and unannotated genes are both counted in the reference set, while in option "intersection", genes are only counted when they are annotated in at least one of the gene sets.
Identified exon-exon junctions were also compared to annotated exon-exon junctions (Ensembl Version 66) to assess the percentage of annotated and unannotated splicing events.
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both recorded and unrecorded
both censored and uncensored
both stained and unstained
both coated and uncoated
both expected and unexpected
both conditional and unconditional
both injured and uninjured
both affected and unaffected
both standardized and unstandardized
both favorable and unfavorable
both successful and unsuccessful
both phosphorylated and unphosphorylated
both regulated and unregulated
both steady and unsteady
both primed and unprimed
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