Sentence examples for both alignment identity and from inspiring English sources

This imbalance in the contributions of homologous compared with non-homologous regions to both alignment identity and score is a hallmark of overextended alignments.

Reads matching mammalian reference sequences with at least 95% alignment identity and 95% sequence read coverage were subsequently aligned to a human filtered (taxonomy identifier 9606) NCBI nucleotide database.

Based on amino acid sequence alignment, identity and similarity scores of the V5B2 humanized variable domain frameworks with HumκI and HumIII human antibody frameworks [36] were calculated by ClustalW.

The amount of overextension does not correlate well with the difference between alignment identity and scoring matrix target identity.

riboPicker uses query sequence coverage, alignment identity and minimum alignment length thresholds to determine if an input sequence is an rRNA-like sequence or not.

Fewer than 1% of 1D sequences passed the screening criteria (covers ≥40% of query and ≥80% alignment identity), and consequently, only 2D sequences were used for further analysis.

For the definition of a valid genome mapping, we used the following criteria: minimum alignment identity and the minimum coverage of the EST sequence of at least 80%.

After the initial selection of GSK homologs by annotation mining and BLAST searches, homologs were detected using BLAST (cutoff 30% alignment identity and 80 amino acids alignment length) in selected genomes.

In this article, we show that scoring matrices have preferred alignment identities and alignment lengths, and that BLOSUM62 can produce overextended alignments, most often between sequences with >33% identity.

All sequences that contained the ambiguous base N were discarded as N aligned to N is considered a mismatch and would alter the alignment identity for identical sequences.

We explored several classification thresholds, including alignment e-value, alignment percent identity, and the ratio between the alignment length and the read length (i.e., coverage).