Sentence examples for both alignment and sequence from inspiring English sources
Both alignment and sequence gaps are treated as missing data in the same way as described in Siepel et al. 2005).
Alignment and sequencing for the health of the joints and spine is key.
For 37 out of 44 target species in a test dataset, we obtain a significant increase of the reconstruction accuracy compared to both the consensus sequence from the alignment and the sequence of the nearest phylogenetic neighbor.
These observations clearly point to widespread problems in the dataset, which in the above examples are mostly likely the result of both mixtures/contamination and sequence alignment issues.
Furthermore, the identification of such regions can aid both structure determination and sequence alignment, and may also aid in drug design.
However, for phylogenetic reconstructions, highly divergent sequences cause problems with both sequence alignment and tree inference [ 73] and we found that inclusion of the most divergent kinesin sequences hindered tree reconstruction (data not shown).
Our combined method that uses network alignment based on both function and sequence similarity led to several improvements in the module detection results.
In the proposed integrated method, both sequence alignment and SVM-LZ complexity pairwise have been used to predict peptide sequence.
It is important to note that an increase in the number of indels, both in real alignments and in sequence evolution simulations, has been linked with an increase in the number of misaligned positions and a consequent overestimation of the number of positively selected sites (Fletcher and Yang 2010; Markova-Raina and Petrov 2011; Jordan and Goldman 2012).
Both phylogenic trees and sequence alignments demonstrated the sequence conservation of coatomer subunits between silkworm and other organisms, especially between silkworm and Drosophila.
Although the characteristic TIRs and TSDs of the five β-amylase elements are easy to align, the regions between the TIRs (excluded from Fig. 1 alignment) are variable in both length and sequence (Fig. 2).
