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Bootstrap values were determined from 1000 replicates.
Bootstrap values were determined on 1000 replicates of the sequence data with the SEQBOOT program.
Protein phylogenies and bootstrap values were determined by Phylip protein maximum likelihood methods using aligned datasets and conservative filters that disregarded columns of data containing sequence gaps.
Bootstrap values were determined from 1,000 pseudoreplicates.
Bootstrap values were determined to assess the robustness of topologies with 1,000 replicates (27 ).
Bootstrap values were determined from 1000 replicates for both parsimony and Neighbor-Joining.
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The NJ tree [ 67] was constructed based on mean character differences (distance) and bootstrap support values were determined based on 10,000 neighbor joining replicates.
Phylogenetic reconstruction was performed by maximum-likelihood inference using RAxML v7.4.2 (Stamatakis 2006) with a general time reversible model of nucleotide substitution and a GAMMA model of rate heterogeneity, branch support values were determined using 1,000 bootstrap replicates.
Then luciferase values were determined.
P-values were determined by bootstrapping with replacement, by taking at least 10,000 random groupings of genes (the same size as the paired subset) and determining the average PCC score for that grouping.
Bootstrap values were used to determine strongly supported splits (>75 %).
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