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To test the robustness of our orthology inference, bootstrap values were acquired on 1,500 randomly chosen domain families using RAxML (−f a -# 400 -m PROTGAMMAJTT -x 12345).
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Bootstrap values were calculated for 1,000 replicates.
Bootstrap values were calculated for 1,000 replicates, only bootstrap values greater than 50 are reported.
Maximum likelihood bootstrap values were obtained by running 10,000 replicates.
Bootstrap values were computed with 1000 replicas.
Bootstrap values were calculated from 1000 pseudoreplicates.
Bootstrap values were determined from 1000 replicates.
Bootstrap values were computed with 100 replicates.
Bootstrap values were assessed with 1000 replicates.
Bootstrap values were estimated by RAxML based on 100 bootstrap replicates.
Bootstrap values were calculated using 10,000 replicates with 10 random addition sequence replicates per bootstrap replicate.
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