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Fig. S3 Bootstrap values of the maximum likelihood tree presented in Fig. 3b.
Bootstrap values of the NJ trees were calculated using 10,000 replicates.
The topology of the MP (maximum parsimony) tree was almost identical to that of the NJ tree, except for a few minor differences at the bootstrap values of the branches (results not shown).
The PCA plot further substantiates the dendrogram clustering method, and especially when bootstrap values of the dendrogram are considerably low, the similar clustering in both the PCA plot and the dendrogram indicates the consistency of the results obtained.
Bootstrap values of the nodes were found to be high in various families.
Bootstrap values of the trees were calculated for 1000 trials using the MEGA4 program package [ 101].
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The topology of the four trees was very similar, although the bootstrap values of those obtained with the data sets 2 and 3 were significantly higher than those based on the data sets 1 and 4 (data not shown).
The bootstrap value of the node is 99%.
The bootstrap value of the separating node was 92%, which is well above the bootstrap value of the G/DE node.
The bootstrap value of the validation dataset was 0.768 955% CI: 0.763 0.774).
The bootstrap value of the beta class branch was calculated from 1000 repetitions.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com