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As the dendrogram shows nine clearly distinguished groups of species supported by high bootstrap values can be observed.
The tree containing all bootstrap values can be found in Additional file 4. The phylotypes are colored as in the core-gene tree.
On the other hand, bootstrap values can be misleadingly low in case of clusters with very short branch-lengths due to high similarity of the viruses [ 33].
The same study emphasized that bootstrap values can be misleading in large phylogenomic data sets and introduced internode certainty (IC) as a more sensitive metric for the detection of incongruence.
However, bootstrap values can be misleading (as bootstrapping is performed using the same model that was used to construct the phylogeny) and cannot be used to infer information about the suitability of the substitution model [ 9].
The tree containing all bootstrap values can be found in Additional file 3. The four main phylotypes A, B1, B2 and D are marked by the colors blue, red, purple and green, respectively.
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We identified discontinuous distributions of PKS homologs among the analyzed fungal species, with low bootstrap values, that can be explained by gene duplication, divergence, and gene loss [ 61].
On the opposite, when considering the audiovisual training group we observed a statistically increase in d' values (bootstrap analysis) which can be interpreted as a facilitatory perceptual effect of the bimodal training on monaural sound localization.
These bootstrap-adjusted measures represent the values that can be expected when the model is applied to future similar populations.
Simulations and bootstrap can be used instead to determine the critical values for a test of hypothesis.
Based on the >50 % bootstrap values, each CCCH subfamily can be divided into 3 5 clades designated as clade α, β, γ, δ, and ϵ.
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