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The bootstrap values are set 1000 for the neighbour-joining and maximum likelihood tree.
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Furthermore, according to this tree, the vertebrate SET domains are divided into 10 subfamilies (≥65% bootstrap support; if the cut-off bootstrap value is set higher than 80%, the subfamily I can be further divided into 3 groups).
Phylogenetic analyses were conducted using MEGA5 (http://www.megasoftware.net/) with the Maximum-Likelihood (ML) and Neighbor-Joining (NJ) methods; the bootstrap value was set to 1000.
The minimal bootstrap cut value was set at 700.
A bootstrap probability threshold value was set at P = 0.8 and only those edges that passed this threshold value were included in the prior, Z1.
In addition, it has been shown that bootstrap values are not reliable robustness estimators for data sets containing less than 100 characters (notably, "true clades" might be unsupported by bootstraps, [40]), and paucity of characters is an intrinsic limitation of this kind of data sets for which there is no solution.
Bootstrap values are mentioned at the node.
Bootstrap values are based on 1,000 replicates.
Bootstrap values are indicated at the branching points (percent values from 500 replicate bootstrap samplings).
1000 iterations were conducted for bootstrap support, and bootstrap values are indicated at each node.
Bootstrap was done with 1000 replicates, according bootstrap values are given on the branches.
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