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Only branches supported by a bootstrap value of at least 50%% are indicated.
The phylogenetic tree shows a clustering pattern that is in accordance with each specific host or variant of the rabies virus, each cluster supported by a bootstrap value of at least 98%.
Clades were defined as having a bootstrap value of at least.8, one or more shared domains outside of the PARP catalytic domain, and having subbranches consisting of proteins from closely related species.
To avoid biases introduced by large scale tree reconciliation [ 26], we retained 445 (45.5%) trees of which the topology was supported with a bootstrap value of at least 75% (the full list of these trees in Newick format can be found in the SI) and only considered the reconciliation results obtained from gene trees with a reliable topology (see materials and methods).
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Figure 3 is distance phylogram of rrs-rrl IGS sequences with bootstrap values of at least 70% for nodes under distance, maximum likelihood and maximum parsimony criteria.
All twelve lineages PI/AP3 (B-related), Bs, AGL15/AGL18, ANR1, SVP/StMADS11, AG (C/D-related), AGL12, SOC1, SEP (E-related), AGL6/AGL13, AP1 (A-related) and FLC clades, were defined with bootstrap values of at least 79 or higher.
Bootstrap value of 99 at the inner node means that the species AY283555.1 and B. bassiana isolate were siblings in 99% of the bootstrap replications and were grouped together in monophyletic clade in 99% of the bootstrap replications (Park et al., 2002; Peterson, 2008 and Ergashev et al., 2009).
A highly supported topology with bootstrap value of 100 at every node was recovered.
The phylogenetic position of the TuPV-LUB group was supported by a bootstrap value of 100%% at the main node.
This clade is not strongly supported in the tree in Figure 2 (bootstrap value of 71 at best).
On the S gene level, genotype I was most closely related to genotype G with a distance of 4.23% and a bootstrap value of 96% at the separating node (data not shown).
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