Sentence examples for bootstrap tree was used from inspiring English sources

Molecular phylogenetic relationships were estimated using the maximum likelihood method [40] as implemented in RAxML; here, a bootstrap analysis [41] was done on 5000 resampled alignments, and every 5th bootstrap tree was used as a starting point for heuristic maximum likelihood analysis of the original alignment.

Every tenth bootstrap tree was used as a starting tree for a full ML search.

Then, every 5th bootstrap tree was used as a starting point for thorough ML analysis, using the GTRCAT model for heuristic searches, and optimising branch lengths and likelihood values of the final trees using the GTR + Γ model of DNA substitution.

In an effort to avoid local optima, every fifth of those bootstrap trees was used as a starting tree in the ML analysis.

Neighbor-joining trees were then computed from each set of distance matrices and the set of resulting bootstrapped trees was used to derive a 70%-majority consensus tree [ 44].

Using the Neighbour-Joining method, a bootstrap consensus tree was used to represent the evolutionary history of the ORFV011 [ 35, 36].

The tree was bootstrapped 100 times and the consensus tree was used.

If many branches in the consensus tree were poorly resolved then one of the maximum parsimony trees was used with bootstrap values manually added to nodes with good support in the bootstrap consensus tree.

Every fifth bootstrap tree was then used as a starting tree for more thorough ML optimization with gamma-distributed rate variation.

Each of the eight multigene family-based phylogenomic trees (see fig. 1) were derived as follows: 1) for each considered multigene family, the 100 bootstrap ML trees were used to generate reconciled species trees.

Bootstrap analyses (1000 replicate neighbor-joining trees) were used to assess the support for individual nodes on the phylogenetic trees.