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Generally, better resolution and stronger bootstrap supports were obtained from DNA datasets that included all substitutions than from those subjected to the weighting.
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Levels of bootstrap support were obtained from 10,000 replicates and the resulting neighbour-joining tree was drawn with POPULATIONS.
The consensus tree and the bootstrap support were obtained with TreeAnnotator of the software package BEAST [ 71].
Seven clades with high bootstrap support were obtained within Stevardiinae, some in agreement with previous classifications but most clades are new.
Bootstrap support was obtained using 100 bootstrap replicates of the same alignment.
Bayesian analyses provided maximal branch support (PP = 1.0) for the respective monophyly of each group, and good ML bootstrap support was obtained for the monophyly of the clade Phlebobranchia + Thaliacea + Aplousobranchia (BP = 86).
Specifically, strong bootstrap support was obtained for nodes defining close relationships between Hel-2 Helitrons from AcNPV and Helicoverpa armigera and Spodoptera exigua, and the Hel-2 element in AcNPV is comparatively more distant from those integrated into PDVs.
Generally higher bootstrap support was obtained for NRPD2/E2-b than for NRPD2/E2-a, reflecting that the former has ca 200 bp longer introns and therefore more phylogenetically informative sites.
For the African isolates, significant bootstrap support was obtained for a group consisting of O/TAN/3/96 and O/UGA/7/03 (East African; EA-2) as well as for a group with O/KEN/10/95 and O/UGA/5/96 (East African; EA-1) and lastly for O/SUD/4/80, O/UGA/1/75, O/UGA/17/98 and O/UGA/6/76 (East African; EA-4) (Fig. 1).
Branch statistical supports were obtained after 100 bootstrap replicates each.
Nodal support was obtained using bootstrap analysis (1,000 replicates).
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