Sentence examples for bootstrap support threshold of from inspiring English sources
The data set was finally reduced to exclusively genes with strongest phylogenetic signal (in this case an average bootstrap support threshold of 90 was feasible), and phylogenetic analyses were performed as described above.
Our next-generation sequencing of Rafflesia gDNA verified a large percentage of the transgenes (63.3%, 31 of 49 HGT transcripts) identified from our cDNA analyses, independent of the bootstrap support threshold (Additional file 8: Figure S6) or transcript length (Additional file 9: Figure S7).
We evaluated both the "matching" and "all" pairing strategies of IsoDE (referred to as IsoDE-Match and IsoDE-All) for fold change threshold f of 1, 1.5, respectively 2, and bootstrap support threshold b between 40%and95%5%.
Informed by these results, in the final analysis of all 4425 patients, we used RAxML (for faster speed over MrBayes) with a threshold bootstrap support of 0.6 (to obtain results consistent with MrBayes and a threshold of 0.95 posterior probability) and a tree size of 150 (which still allowed fast phylogenetic reconstruction).
Consensus phylogenies were then constructed using DENDROPY software with a "majority rules" threshold bootstrap support frequency of 0.50 at each bipartition (Sukumaran and Holder 2010).
E.g., the subset identified as non-monophyletic with the widely used threshold of 0.95 posterior probability with MrBayes could be reproduced using a threshold bootstrap support of 0.6 in RAxML.
A series of 2000 bootstrap replicates was performed in addition to a partition analysis in Phylopart (version 2.0) based on a percentile distance threshold of 9% and bootstrap support of ≥80%.
We assessed support for internal nodes with the PAUP bootstrapping procedure and depicted internal nodes with bootstrap support of more than 85% in a phylogenetic tree.
Phylogenetic analyses found tissue-specific clades with strong bootstrap support in half of the participants.
The phylogenetic tree showed monophyletic clades with good bootstrap support for each of the major families.
A maximum likelihood tree was constructed, revealing high bootstrap support for 90% of species clusters.
