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Bootstrap support of the hCoV-229E/GhanaBt-CoVGrpI root point in neighbor-joining analysis was 100%.
Maximum likelihood bootstrap support of the best Bayesian tree was computed using [ 61].
The percentage bootstrap support of the internal branches is given below each relevant topology.
It also marks the transition zone for bootstrap support of the Gnecup and Gnepine hypotheses.
Well-consistent branching order was observed in the phylogenetic trees based on both datasets, although the bootstrap support of the topology was only strong for nuclear genes.
A consensus tree of the resulting 100 CVTrees was calculated by using MEGA5 (Tamura et al. 2011) to evaluate bootstrap support of the topology.
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The bootstrap support of this monophyletic group of the tree lies at 56%.
However, traditional bootstrapping does not take into account either the "tree-likeness" of phylogenies inferred from pseudo-replicated sequences (i.e., how well these phylogenies fit the corresponding pseudo-replicated sets of sequences) or the bootstrap support of those phylogenies.
For instance, this clade has the lowest bootstrap support of any of the morphological groups, but support for the group and for nearly every node within the group jumps to nearly 100% if Cavostelium apophysatum is removed from the analysis (data not shown).
Figure 3 shows how the average bootstrap support of branches in the regional trees increases as a function of alignment length.
The split between the Himalayan/North East and Western Ghats populations of leopard cat had a bootstrap support of 93% for the ML and 100% for the NJ tree (Figure 2).
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