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Although approximate likelihood ratio test (aLRT) support values are high, bootstrap support is low, especially in the deeper nodes.
However, bootstrap support is low for most branches, which implies that the detected difference in gene content is negligible.
Only two exceptions were observed: In one case, kalign-based ML bootstrap support is low (BSML = 12), and MP high (BSMP = 100).
One member of subsection Purpureae, A. fasciculata, appears to be most closely related to A. linifolia although the bootstrap support is low.
Dorsoconcha appears as a monophyletic group although bootstrap support is low (60%), and the Variopoda is strongly supported in all Maximum Likelihood analyses; Bayesian posterior probabilities are high for both nodes.
A phylogenetic tree set up for the sequences together with closely related strains and reference strains confirmed the different groupings of the strains according to their origin from area SW (subtype 3b) or E (subtype 3a), although the bootstrap support is low due to the short sequence (Fig. 3).
Similar(53)
Although group 1D consistently clustered on neighbor-joining and parsimony trees, bootstrap support was low (53%).
Both the resolution of the tree and the bootstrap supports were low, which was not surprising given the small number of informative characters.
The remaining eukaryotes from this part of the tree (Fungi, Metazoa, Microsporidia) branch in a cluster with a proteobacterium and Cytophaga, but bootstrap support is very low.
Bootstrap support is relatively low at all nodes because the cathelin-like domain, which is encoded by three out of the four exons, is so highly conserved, meaning the evolutionary signal is mostly coming from the relatively short but variable fourth exon.
Considering the trees inferred in Figure 7, relationships among P. albicaulis, P. lambertiana, P. monticola, and the clades { P. chiapensis, P. strobus} and { P. ayacahuite, P. flexilis, P. strobiformis} are not stable across inference strategies, and bootstrap support is generally low.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com