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A total of 100 non-parametric bootstrap samplings were carried out to estimate the support level for each internal branch for both the ML and NJ trees.
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The samplings were carried out between July 2011 and October 2014.
Samplings were carried out on 0.75 m in the centre of each experimental unit.
Two additional samplings were carried out in herd C at weeks 9 and 11 after arrival.
A total of 10 independent Latin hypercube samplings are carried out.
Bootstrapping analysis (1000 re-samplings) was carried out using software FREETREE V.0.9.1.50 [ 66].
A total of 100 non-parametric bootstrap samplings were performed to estimate the support level for each internal branch in the ML, NJ and MP trees.
Bootstrap resamplings were carried out 1000 times.
One thousand bootstrap replicate analyses were carried out with Mega4.0.
Clinical monitoring and all sampling procedures were carried out in a blind manner.
Goats were clinically monitored and all sampling procedures were carried out in a blind manner.
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