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These bootstrap results were obtained by re-sampling 10,000 times from each testing fold, calculating the AUC on each bootstrapped sample, and then averaging each of those bootstrapped AUCs across the ten cross-validation folds.
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All computations were performed with a cutoff level of 50% bootstrap for including a polychromatic quartet in the analysis, but qualitatively similar results were obtained for other bootstrap values, and even without taking bootstrap support into consideration (results not shown).
Similar significance results were obtained by bootstrap resampling.
Similar results were obtained from the bootstrapping procedure, confirming the validity of the derived equation.
However, bootstrap support for this placement is low and conflicting results were obtained with alternative methods (distance and parsimony).
Similar results were obtained using the neighbor-joining method as implemented in MEGA4 [ 65] with bootstrap values of 10.000 replicates.
No significant results were obtained.
A similar result was obtained for AG-like genes, but the bootstrap support was not very strong.
Unless otherwise stated, the bootstrap results are based on 1000 bootstrap samples.
Unless otherwise stated, the bootstrap results are based on 10,000 bootstrap samples.
Levels of bootstrap support were obtained from 10,000 replicates and the resulting neighbour-joining tree was drawn with POPULATIONS.
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