Neighbor-joining (NJ) trees (Kimura two-parameter substitution model) with bootstrap values (1,000 replications) were constructed using Mega 5.0 [ 42].
The number of bootstrap replications was fixed at 1000.
A phylogenetic tree was constructed by the neighbor-joining method and 1,000 bootstrap replications were performed to evaluate the robustness.
Trees were constructed using the neighbor joining algorithm with the JTT distance matrix [ 45] and 1000 bootstrap replications were carried out to give a consensus tree.
A consensus tree following 1000 bootstrap replications are shown.
For each data set, 1000 bootstrap replications were used, resulting in a bootstrap percentile confidence interval for the AMA.
In the bootstrap estimation 1000 bootstrap replications are used to produce the bootstrap distribution of PR.
A phylogenetic tree was constructed by 500 bootstrap replications, as shown in Figure 3.
The phylogenetic tree was constructed by 500 bootstrap replications and the neighbor-joining method.
An unrooted phylogenetic tree of OsSND2 homologs in rice and Arabidopsis was constructed using MEGA5 software with 1000 bootstrap replications (Tamura et al., 2011).
