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One hundred bootstrap replicates were computed and applied to the best scoring ML tree.
For all analyses under the distance or maximum parsimony criterion, 1000 bootstrap replicates were calculated; for maximum likelihood, 500 bootstrap replicates were computed.
Similar(58)
Amino acid sequences of each homolog family were aligned with Muscle [ 48], and a neighbor-joining phylogenetic tree supported by 1000 bootstrap replicates was computed with FastTree [ 49].
The consensus tree from 100 bootstrap replicates was computed with TREE-PUZZLE [ 34] and the percentages of bootstrap trees supporting a split in the consensus tree were used as branch support values.
A majority rule-consensus tree of 100 bootstrap replicates was also computed to evaluate node support.
Ten thousand bootstrap replicates were performed.
Bootstrap replicates were performed using 1000 replicates.
Five hundred bootstrap replicates were generated.
Five bootstrap replicates were created.
100 bootstrap replicates were performed.
1000 bootstrap replicates were performed.
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