Sentence examples for bootstrap replicates were carried from inspiring English sources
For analysis, 2000 bootstrap replicates were carried out to identify the best partitioning scheme.
1 000 bootstrap replicates were carried out to assess the clade credibility of the NJ phylogram.
To determine the support for individual clades, 1000 bootstrap replicates were carried out on the trees produced by each method [ 53].
A phylogenetic tree was constructed using neighbor-joining method [ 52] and maximum composite likelihood model implemented in MEGA, and 1000 bootstrap replicates were carried out.
Maximum-likelihood (ML) trees were constructed from both individual alignments and a concatenated alignment of all single-copy ortholog groups using RAxML (version 7.4.2; Stamatakis 2006) with the "GTRGAMMA" model and 100 bootstrap replicates were carried out to evaluate the reliability of tree topologies.
Distances were also calculated using Tree-Puzzle with the same settings (and parameters estimated from the data), and trees constructed using WEIGHBOUR 1.0.1a [ 35]. 100 bootstrap replicates were carried out using puzzleboot [ 36], which gave similar results as maximum likelihood (not shown).
To assess the reliability of the phylogenetic networks, bootstrap analyses with 1000 replicates were carried out.
Bootstrap ML analyses with 100 replicates were carried out with the fast ML method implemented in RAxML using custom implementations of the MtZoa models and a four-category gamma distribution.
Bootstrap resampling and reconstruction with 1000 replicates were carried out to confirm the reliability of the phylogenetic trees.
Bootstrapping (1000 replicates) was carried out to estimate the support for NJ and MP topology [ 66, 67].
Bootstrapping (500 replicates) was carried out using MEGA (version 3.1) [ 61] or the Phylip group of programs (version 3.5) [ 62] using neighbor-joining or minimum evolution methods and several models of amino acid substitution, including poisson correction and Jones, Taylor & Thornton (JTT).
