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The consensus tree of these 100 bootstrap replicates was generated with the consense option of the PHYLIP package.
A neighbor-joining tree with 1000 bootstrap replicates was generated from the resulting alignment, using Clustalw with default parameters.
For each gene set, a 70% neighbour-joining (NJ) consensus tree based on 500 bootstrap replicates was generated and the consensus tree rooted with Osmerus mordax sequences (rainbow smelt).
Similar(57)
The consensus sequences of the subgroups were used in the analysis and 1,000 bootstrap replicates were generated for each analysis.
For each tree along the alignment 1000 bootstrap replicates are generated and the bootstrap support for the clustering of the query sequence with each of the pre-defined parental groups is recorded.
Five hundred bootstrap replicates were generated.
One hundred bootstrap replicates were generated for the ML analysis.
500 bootstrap replicates were generated (Additional file 3).
Two thousand bootstrap replicates were generated by randomly resampling the original data set with replacement.
Additionally 200 multiple inferences were executed on the original alignment and 1000 bootstrap replicates were generated.
Bootstrap replicates were generated using the application SEQBOOT (available in PHYLIP package).
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