Sentence examples for bootstrap replicates on the from inspiring English sources

Phylogenetic trees were computed (with 100 bootstrap replicates) on the remaining alignments with the fast Maximum-Likelihood method implemented in PHYML [45].

We ran SVDquartets+PAUP* with 100 bootstrap replicates on the 424 remaining gene alignments.

PHYLIP program package (Felsenstein, 1993) was used to create 5,000 bootstrap replicates on the sequence data (SEQBOOT).

We ran analyses in RAxML (Stamatakis et al. 2008) to carry out bootstrap replicates on the data sets where bootstrapping automatically stopped using the "majority rule" criterion.

The profile neighbor-joining algorithm was executed with 10000 bootstrap replicates on the RNA structural alignment, using the GTR model and rate matrix 'Q_ITS2.txt' for distance correction.

Bootstrap aggregation produces several models based on bootstrap replicates of the original data set.

We then ran PhyML with "HKY85 + I" as nucleotide substitution model on the alignment as well on 100 bootstrap replicates of the alignment.

In Figures 2 and 4, it is demonstrated that dynamic bagging is able to achieve a comparable performance using only about 60% of the number of bootstrap replicates on average as compared to bagging with 100 bootstrap replicates.

Neighbor-joining analyses were done using the BioNJ algorithm [ 70] and 1000 bootstrap replicates on MEGA version 4.0 [ 71].

It consists of training a set of classifiers, each being based on a bootstrap replicate of the training set, and aggregating them according to relative credits or weights.

Confidence in topologies was evaluated based on 1000 bootstrap replicates (for the neighbor joining) or posterior distributions.