Sentence examples for bootstrap replicates for the from inspiring English sources

We have shown that parallel computing can enable the use of very large number of bootstrap replicates for the study of moderate sized protein phylogenetic datasets when using the robust maximum likelihood method in relatively short time frames (typically less than 48 hours).

The ML method used 100 bootstrap replicates for the entire North American alignment and 1,000 bootstrap replicates for the Upper Texas Gulf Coast region alignment.

The 1000 bootstrap replicates for the smaller ITS dataset were accomplished on a single desktop computer.

The sequences were aligned with MAFFT (Additional files 2 and 3) [ 41] and maximum-likelihood phylogenetic trees constructed using PhyML [ 42] with 100 bootstrap replicates for the HZT and HZT + OG, and 144 bootstrap replicates for the CZT.

Bootstrap values on the bifurcating branches were based on 1,000 random bootstrap replicates for the consensus tree.

Confidence in topologies was evaluated based on 1000 bootstrap replicates (for the neighbor joining) or posterior distributions.

For a single bootstrap replicate for the day 0 data, reads were extracted that had 0, 1, 2, and 3 mismatches somewhere in the read.

We estimated branch support with a bootstrap analysis (Felsenstein 1985), using 1,000 replicates, with 100 random addition replicates per bootstrap replicate for the parsimony analysis (for the ML analyses, see below).

To determine the extent to which one character state received significantly more support over the other state at a particular node, we calculated the number of bootstrap replicates for which the ratio between the two proportional likelihood scores (e.g., L present/L absent) was greater than 7.4 [ 109].

These were compared with neighbor-joining trees constructed using BioNJ using 100 bootstrap replicates for alignments of the total kinome, or 500 replicates for individual groups of kinases.

The left-hand bar shows performance assessed over 50 single ML reconstructions (one from each of the 50 datasets evolved at that relative length increment), while the right-hand bar shows performance assessed over 50 consensus trees (each of which summarizes 10 bootstrap replicates for each of the same 50 datasets).