Sentence examples for bootstrap replicate value of from inspiring English sources

For genes too divergent to be aligned via Maximum Likelihood method (coat and tail genes), translated protein alignments were used to construct Neighbor-Joining trees in Unipro UGENE using the following parameters; a distance matrix model of F84, transition/transversion ratio of 2.0, and a bootstrap (replicate) value of 1000.

To assess whether genes in the sexual gene category evolved faster than the genes of the vegetative and constitutive gene categories, 1000 bootstrap replicates of dN/dS values from a concatenated alignment of 10 randomly chosen genes from each gene category were run.

The association index (AI) represents the mean ratio of 100 bootstrap replicates of the association value calculated from the test sequences to those of species-reassigned controls from 200 permutations [79].

Maximum likelihood dendrogram of the C-terminus computed with 1,000 bootstrap replicates, bootstrap values ≥ 50% are displayed on dendrogram branches.

Thus, is a bootstrap replicate of.

The 95% confidence intervals (CI) for the estimated RR were based on the 2.5th and 97.5th percentiles of the distribution of 1,000 bootstrap replicates of the RR; the p-values for the estimated RR were two-sided and also based on 1,000 bootstrap replications.

From this phylogenetic analysis we observe: In all three cases, Orly sequences form a discrete clade (bootstrap support value of 1000/1000 replicates for all three trees).

Support values for trees were assessed with 1,000 bootstrap replicates and the likelihood values of the final trees were evaluated and optimized under PROTGAMMA with four gamma-distributed discrete rate categories.

We compute a confidence value for putative local solutions derived from bootstrap replicates of the original solution.

Sequences were aligned using Clustal with the MEGA 4.0 software package (http://www.megasoftware.net/) and a phylogenetic tree using all protein sequences was calculated using the neighbor-joining method and the PAM matrix (Figure S1) and a bootstrap value of 500 replicate samplings.

A bootstrap value of 250 replicates was taken to obtain more confidence in drawing parameters.