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The reconstruction of the tree was conducted with RAxML 7.0.4 [ 50] with 100 bootstrap repeats, under the CAT + Γ + I, and with Phylobayes 3.2 [ 51] under the CAT model.
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The resulting tree was tested with 200 bootstrap repeats with PhyML with the same settings.
The reliability of the phylogeny was evaluated with 1000 bootstrap repeats.
The maximum likelihood method was used for the analysis with 1000 bootstrap repeats (black circle isolates in this study, filled triangle type strains of species of FGSC).
The NJ trees were constructed with the Geneious Tree Builder using the HKY85 model [ 33] with 1000 bootstrap repeats.
All runs were performed with 100 bootstrap repeats.
In each bootstrap repeat, n s subjects were selected with replacement from the parent data set.
Estimates are averaged over 20 bootstrapping repeats.
Prosecutors attempted to bootstrap crimes under the Stored Communications Act (SCA) with those under the CFAA to make the offenses appear more serious, Hofmann says.
Using the LGT3State program [ 26], we generated 1000 bootstrap distributions under the gene loss only model.
Confidence was inferred by running 1,000 bootstrap replicates under the GTRCAT model.
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