Sentence examples for bootstrap matrix on the from inspiring English sources
For TConsensus, branch lengths and all substitution model parameters were estimated from each bootstrap matrix on the fixed topology using the GTR+I+G substitution model in PAUP* [ 95] because RAxML cannot evaluate a tree containing mutlifurcations.
We then inferred a hierarchical clustering (average linkage) on the bootstrap similarity matrix using the methods provided in the scripts of the authors.
The profile neighbor-joining algorithm was executed with 10000 bootstrap replicates on the RNA structural alignment, using the GTR model and rate matrix 'Q_ITS2.txt' for distance correction.
Bootstrap values on the consensus trees were derived from 1000 bootstrap replicates.
Moreover, if we switch to the bootstrap, precision depends on the number of bootstrap samples.
Optimized parsimony and (non-parametric) bootstrapped trees were found by nearest neighbor interchange with a cost matrix based on the difference between pathprint scores.
The consensus tree and confidence values were calculated via bootstrapping datasets, based on the Euclidian distanced matrix obtained for each of the 1000 permuted gene expression profile datasets.
Bootstrapped confidence intervals on the parameter estimates were calculated based on 5,000 randomly bootstrapped samples.
To perform bootstrapping, Sigma generates a bootstrap Q matrix by randomly taking rows from the original Q matrix with replacement.
Bootstraps on the mean, median, variance, skewness and kurtosis of these distributions are performed.
