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Exact(7)
In each phylogenetic reconstruction, 100 bootstrap iterations were performed.
Positions with gaps were excluded and 1000 bootstrap iterations were performed.
Phylogenetic trees were constructed using the RAxML program (Stamatakis 2006) under a GTR + Γ substitution model, and 100 bootstrap iterations were performed.
Using class discovery under correlation distance and Euclidean distance metrics, 10,000 bootstrap iterations were performed to assess the significance of the observed clusters using the pvclust package for R[ 25].
Specifically, amino acids bias, disorder promoting regions and flexibility were analyzed using Composition Profiler [ 91] and the SwissProt 51 database [ 92] as a reference; 10,000 bootstrap iterations were performed.
For these genes, we performed a BN analysis using no prior information as well as seeds derived from the literature, PPI data, and the combination; in each case, 100 bootstrap iterations were performed using hill climbing and the BDe score.
Similar(53)
A total number of 1000 bootstrapping iterations were performed, and the prediction accuracies of these test set iterations were then averaged and reported.
Five hundred bootstrapped iterations are performed to obtain an estimate of the classification error rate.
For each sample, 25 iterations were performed.
10 iterations were performed.
Iterations were performed 100 times.
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