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Bootstrap inferences were conducted separately for each loci with 500 pseudoreplicates.
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Statistical inference was conducted in two stages.
Ten ML analyses with 5000 bootstrap (likelihood bootstrap: LB) resamplings were conducted using RAxML-HPC2 v7.2.7-3 (Stamatakis et al.2008) via the CIPRES Portals (http://www.phylo.org/index.php/portal/).
Bootstrap analyses were conducted using 1000 replications, SPR search method, search-level 5.
The ML bootstrap analyses were conducted with 500 replicates because of high computational demands.
All bootstrap analyses were conducted using the program Statistics101.
2,000 bootstrap replicates were conducted for each of these four datasets.
200 bootstrap replicates were conducted.
Bootstrap tests were conducted using 1,000 replicates.
Bootstrap analyses were conducted using 1,000 replicates.
GTRCAT and GTRGAMMA options were used, 1000 rapid bootstrap replicates were conducted to assess bootstrap values.
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