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The family defining bootstrap cutoff values are tree-specific, and are set to be the smallest bootstrap value of the reference miRNA families (let7, mir-124, mir-17 and mir-1, See additional file 3: Reference miRNA families) in each input tree.
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First, for each tree and from root down, the branches with bootstrap value above the family defining cutoff values are sought.
The input for the "Vote" algorithm includes the set of bootstrap trees (bTree1,... bTree n ), the "family defining bootstrap cutoff values" which are derived from well studied known families and are tree specific, and a "evaluation bootstrap cutoff value" which is used to evaluate families defined in other trees.
The robustness of the estimated cutoff values was examined using the nonparametric bootstrap method (Efron, 1979) with generation of 10 000 bootstrap samples to attain the empirical sampling distributions of the estimated cutoff values.
Alternatively, arbitrary cutoff values were selected.
The cutoff value was ≥7.
The adopted VIF cutoff value was 10.
The cutoff value is 0.50.
Obviously, the cutoff value is.
Its cutoff value was -6.0%.
The HC2 positive cutoff value is ⩾1.0 (signal/cutoff ratio).
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CEO of Professional Science Editing for Scientists @ prosciediting.com