Sentence examples for bootstrap cutoff value of from inspiring English sources
As shown in figure 5, the PlusC OBPs clustered as seven major phylogenetic clusters based on bootstrap cutoff value of 50%, but we further subdivided them into 11 subtypes (mplus1– mplus11).
The input for the "Vote" algorithm includes the set of bootstrap trees (bTree1,... bTree n ), the "family defining bootstrap cutoff values" which are derived from well studied known families and are tree specific, and a "evaluation bootstrap cutoff value" which is used to evaluate families defined in other trees.
This analysis indicates that selecting bootstrap cutoff values lower than the recommended default setting of 50% results in considerable enhancement of sensitivity, with little reduction of specificity (especially for RIO).
The family defining bootstrap cutoff values are tree-specific, and are set to be the smallest bootstrap value of the reference miRNA families (let7, mir-124, mir-17 and mir-1, See additional file 3: Reference miRNA families) in each input tree.
ASaturA analyses were performed using PAM250, Kimura's correction and a cutoff value of 9, with 1000 rounds of bootstrap.
Phylogenies were constructed for all datasets with the Neighbor-joining algorithm, 1000 bootstrap repetitions, p-distance estimations as a statistical model, uniform substitution rates and a partial sequence cutoff value of 95%%.
