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Phylogenetic analyses were conducted using the Maximum Composite Likelihood method in Molecular Evolutionary Genetics Analysis MEGAA) software version 4.0.2 [74] and bootstrap consensus trees were inferred from 1,000 replicates.
The bootstrap consensus trees were inferred from 500 replicates.
Bootstrap consensus trees were constructed with the PAUP 4.0 program.
The parsimony bootstrap consensus trees were derived from a search consisting of 500 bootstrap replicates using a full heuristic search.
Individual bootstrap consensus trees were examined for conflicting nodes supported by bootstrap percentages of 75% or higher.
Then, by using the maximum parsimony (MP) algorithm implemented in MEGA5.1 [ 84], the bootstrap consensus trees were inferred from 500 replicates to represent the inferred evolutionary history.
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Maximum parsimony (MP) strict and maximum likelihood (ML) bootstrap consensus trees are available as supplemental Figures S1 4.
The bootstrap consensus tree was taken inferred from 1000 replicates.
Cladistic analysis used the maximum parsimony method [20] and the bootstrap consensus tree was inferred from 10,000 replicates.
Relatedness trees were constructed based on chord distances using the neighbor joining algorithm, and a majority rule bootstrap consensus tree was built using the programs NEIGHBOR and CONSENSE in PHYLIP v. 3.65 [64].
The bootstrap consensus tree was inferred from 1,000 replicates.
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