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Construction of an unrooted neighbor-joining [ 96] phylogenetic tree and bootstrap analysis were conducted using the Molecular Evolutionary Genetics Analysis (MEGA) 5.0 program [ 97].
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To test if the mean VMR and CV for these duplication groupings were significantly different from the genomic mean, a bootstrap analysis was conducted.
Bootstrap analysis was conducted with 1,000 replicates.
Each bootstrap analysis was conducted with random seed values.
For statistical reliability, Bootstrap analysis was conducted with 1000 replicates.
Bootstrap analysis was conducted with 100 resampling iterations.
A bootstrap analysis was conducted with 1000 replications.
Bootstrap analysis was conducted using 1000 bootstrap replicates using seqboot [ 94].
A bootstrap analysis was conducted with 100 samples for each protein.
Non-parametric bootstrap analysis was conducted under 1,000 replicates with TBR branch swapping.
Bootstrap analysis was conducted using 1000 replicates to test the robustness of the phylogenetic tree.
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