Bootstrap analysis was performed with 1,000 replicates prepared with SEQBOOT in PHYLIP and consensus was calculated with CONSENSE70.
A bootstrap analysis was performed with 1000 replications as confirmation of each clade.
A 500 replicates bootstrap analysis was performed to evaluate the cluster stability.
Bootstrap analysis was performed with 100 resamplings.
Bootstrap analysis was performed using 500 replicates.
Bootstrap analysis was performed using SEQBOOT, with a replicate number of 1000.
Bootstrap analysis was performed on 1000 replicates of the initial datasets.
Bootstrap analysis was performed using STATA 10.0 (STATA Corporation, College Station, TX).
Bootstrap analysis was performed on 1000 replicates to ascertain support for the groupings in the tree.
Maximum likelihood (ML) trees were inferred with PAUP* [47] and RAxML [42], [43]; bootstrap analysis was performed with RAxML.
As in the cases of datasets A and B, a bootstrap analysis was performed to obtain confidence intervals for the parameters of interest and to test the differences in specialization between normal and tumor tissues.
