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A ML bootstrap analysis was implemented in GARLI 0.96 (500 inferences, each terminated after 10,000 generations without improving topology) using Portal 2.2 to access the CIPRES cluster at the San Diego Supercomputing Center.
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ML analysis was implemented in tool RAxML v7.6.6 [ 33] using GTRGAMMA approximation with 1000 bootstrap replicates.
Maximum-likelihood bootstrap analysis was calculated using 100 replications employing the rapid bootstrapping approach implemented in RAxML.
Bootstrap analysis was performed by using the Resampling of Estimated Log-Likelihoods (RELL) method as implemented in ProtML [ 48, 49].
The ML was run implementing the GTR + G model (for all codon positions) and a bootstrap analysis was performed to gauge clade support.
Phylogenetic trees were constructed using a neighbour-joining method implemented in the MegAlign module of the DNASTAR software package (Lasergene, Madison, WI, USA) and bootstrap analysis was performed with 1000 trials and 111 random seeds.
Bootstrap analysis was done using 1000-times resampledatata.
Bootstrap analysis was based on 500 replicates.
Bootstrap analysis was performed with 100 resamplings.
Bootstrap analysis was performed using 500 replicates.
Bootstrap analysis was done similarly to [29].
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