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Bootstrap analysis was done using 1000-times resampledatata.
Bootstrap analysis was done similarly to [29].
Furthermore, because of the highly congruent branch pattern from these two runs, the bootstrap analysis was done with the most efficient PROTCAT method (as recommended recently [36]) and rtREV+F on 100 pseudoreplicates and one random starting tree for each replicate.
Bootstrap analysis was done with 1000 pseudoreplicates.
Bootstrap analysis was done as previously described in [ 20].
A bootstrap analysis was done with 1,000 pseudoreplicates.
Similar(47)
ML analysis was done with bootstrapping (100 replicates) using the WAG evolutionary model, assuming four substitution rate categories, and using the program defaults for estimating the gamma distribution parameter and optimization of trees.
Bacterial phylogeny was tested using neighbor-joining and statistical analysis was done by the bootstrap method.
The analysis was done with 1000 bootstrap replicates of the data.
A maximum parsimony (MP) analysis was done by heuristic bootstrapping (1000 steps) using PAUP and the branch-swapping algorithm tree-bisection-reconnection (TBR).
Maximum likelihood phylogenetic analysis was done with RAxML [ 101], with 1000 bootstrap replicates and default settings.
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