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The whole genome alignment was subdivided into 1000 bp sections, and an ML bootstrap analysis performed on each non-partitioned section using PHYML and the GTR+G+I model of evolution.
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Bootstrap analysis was performed on one thousand replicates and subsequently a 95% confidence network was constructed.
Bootstrap analysis was performed on 1000 replicates of the initial datasets.
Bootstrap analysis was performed on 1000 replicates to ascertain support for the groupings in the tree.
Bootstrap analysis was performed on 1,000 replicates.
Bootstrap analysis was performed on the basis of 100 replicates.
For PhyML phylogeny, bootstrap analysis was performed based on 100 replicate trees.
Bootstrap confidence analysis was performed on 1,000 replicates using the Neighbor-Joining method [ 53].
Bootstrap analysis was performed using the above mentioned conditions on 1000 replicates.
To evaluate the stability of clades on the optimal tree, a bootstrap analysis was performed with 100 bootstrap replicates.
Bootstrap analysis was performed with 1,000 replicates prepared with SEQBOOT in PHYLIP and consensus was calculated with CONSENSE70.
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