Sentence examples for bonds were constrained using from inspiring English sources

Covalent bonds were constrained using LINCS algorithm.

Hydrogen containing bonds were constrained using SHAKE [ 43].

Bonds were constrained using the LINCS algorithm (48).

The hydrogen bonds were constrained using SHAKE algorithm.

All bonds were constrained using the LINCS algorithm (Hess et al., 1997; Hess, 2008).

In order to use a time step of 0.2 fs, all covalent bonds were constrained using the LINCS algorithm [ 56].

The SETTLE algorithm [42] was used to preserve the bond lengths in water molecules, while the lipid bond lengths were constrained using the LINCS algorithm [43].

The bond lengths were constrained using the SHAKE algorithm [50].

Neighbor lists were utilized and updated every five steps, and all protein and water bond lengths were constrained using the LINCS and SETTLE algorithm, respectively [27].

Bond lengths were constrained using the LINCS method (73).

Bond lengths were constrained using the P-LINCS algorithm.