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Both sets of chromosome blocks were downloaded from Ensembl 60 (November 2010).
phastCons scores for 171,317 alignment blocks were downloaded from UCSC Genome Browser.
The catalog data for a commercial compound library of ca. 2.5 mln synthetic building blocks were downloaded from the internet site (http://www.abamachem.net/).net/
To investigate the genomic organization of trihelix genes, duplication blocks were downloaded from the database, as described in Materials and methods.
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To derive haplotype blocks, SNPs for the haplotype map construction were downloaded from the Broad Institute http://www.broadinstitute.org/mouse/hapmap/.org/mouse/hapmap/
These complexes were downloaded from the Brookhaven Protein Data Bank (PDB).
GTF files for gene annotation were downloaded from GENCODE (M9).
Gene structure annotations were downloaded from Ensemble release 94 (Sscrofa11.1).
Matlab scripts were downloaded from: http://www.sciencedirect.com/science/article/pii/S2211124715006488.sciencedirect.com/science/article/pii/S2211124715006488
Structural data were downloaded from PDB (accession number 1XPU).
All gene lists were downloaded from the IAV database9.
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