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Chromatin-mark-occupied 1 kb blocks were defined as any 1 kb block that overlapped a called ChIP-seq peak.
Although blocks were defined as having at least two SNPs with MHH ≥0.9 in this study, the definition can be changed.
Haplotype blocks were defined as a group of htSNPs whose upper 95% confidence bound for D' exceeded 98% with the lower bound above 70% [17] and a haplotype was examined if it occurred in more than 1% of individuals.
Haplotype blocks were defined as regions demonstrating strong evidence of historical recombination between <5% of SNP-pair comparisons [ 24].
Synteny blocks were defined as series of neighboring pairs of orthologs separated by less than three intervening orthologs.
For this analysis, blocks were defined as contiguous regions of 50 bp to 100 kbp displaying a minimum of 70% nucleotide identity.
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Then we see that the process is modeled by a system ( A ¯, B ¯ ), A ¯ = ( A ¯ 1 Φ ¯ O A ¯ 2 ), B ¯ = ( B ¯ 1 B ¯ 2 ), where the matrix blocks are defined as in (4) and Φ ¯ represents the connection between the two groups.
If the acceptance set for the vector consisting of blocks is defined as the set of vectors such that for at least indices and the estimate of the probability of incorrect decision for each block is greater than, then the estimate of probability of incorrect decision for blocks is close to 1. Nevertheless, if the acceptance set is defined differently, considerations of this section are of interest.
For example, when blocks are defined as having at least two SNPs with HH ≥0.5, we would expect to capture population-specific LD decay if the frequency of the advantageous allele had risen up to approximately 70% or more.
For IRMBASE 2 and DIRMBASE 1, the core blocks are defined as the conserved ROSE motifs.
In the case of a graph-induced structure, blocks are defined as small connected components of that graph.
More suggestions(17)
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