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To further investigate the potential evolutionary mechanisms of the PbHsf gene family, we performed all-vs.-all local BLASTP to identify synteny blocks, using a method similar to that used for the Plant Genome Duplication Database (PGDD), across the entire Chinese white pear genome.
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Outliers were defined per participant and block, using a method commonly applied for box plots: First the interquartile distance (the distance between quartile 1 and quartile 3) was computed; RTs were then defined as outliers when they were higher than 3 interquartile distances above quartile 3 or lower than 3 interquartile distances below quartile 1.
Total DNA was extracted from 10 μm sections of paraffin-embedded tissue blocks using a phenol chloroform method (Pauluzzi et al, 2004).
A 4 mm-diameter needle was used to sample representative tumour areas from paraffin blocks using a modification of the method described by Kononen et al (1998).
The developers of the WCGNA package have identified this pitfall and have developed a function that allows users to complete an analysis on a standard computer by pre-clustering genes into "blocks" using a modified k-means method [ 65].
While it is easy to measure the product of the two linear blocks using a Gaussian excitation and linear identification methods, it is difficult to split the global dynamics over the individual blocks.
As a consequence of the decision, states and municipalities are now blocked from using a method of public financing that is simultaneously likely to attract candidates fearful that they will be vastly outspent and sensitive to avoiding needless government expense.
Briefly, this method is composed of three steps: (i) label the patterns from the test set (an unlabelled data block), using an unsupervised method; (ii) compute some statistics from the train and test sets, conditioned to the given class labels for train set; and (iii) compare the training and testing statistics using a multivariate hypothesis test.
In this paper, the convex nonlinear production cost functions in (2) are approximated by a set of piecewise linear blocks using the method applied in [34].
Individual stretches of syntenic genes were merged into larger syntenic blocks using the method described in (Yang 2007).
We used a method combining blocking and stratified randomization to ensure a close balance of the numbers and patients' characteristics in each group.
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