Sentence examples for blocks of alignment from inspiring English sources

Small blocks of alignment that cover exons of protein coding genes anchor the majority of orthologous TFRs pairs.

We considered TFRs orthologous between zebrafish and human, mouse, or opossum, if any zebrafish TFR contained blocks of alignment within a human, mouse or opossum TFR.

When the cDNA matched an accession with multiple blocks of alignment, e.g. from multiple exons, the percent identities between the most similar A, B and D hits to rye sequences were calculated based on the total length of the alignment blocks of each hit.

Comparisons of computational speed with respect to the literature is somehow difficult to infer since (1) not every work declare computational speed, (2) only isolated blocks of the alignment chain are usually considered (e.g. feature extraction) instead of the entire pipeline, (3) hardware obsolescence.

Once all genomes have been aligned to the reference, we then identified intervals of the reference that map tightly to a single interval of some or all of the target genomes, and we consider these the endpoints of blocks of multiple alignment.

We parsed the blocks of this alignment requiring non-duplicated sequence in both human and chimpanzee and sequence of at least one other primate, which reduced our quasi-genomic set (referred to as h1c1o1: human, chimpanzee and other primate) to 79.99% of the human genome.

Inhibition of ERK1/2 blocked effects of alignment.

Under each combination of a block size and an interval length, we examined the number of genealogies in every alignment block and the number of alignment blocks sharing a genealogy with an adjacent block.

Gaps were therefore considered as blocks, defined as stretches of alignment with no aligned nucleotides.

Therefore, a conserved block of concatenated alignment was selected using the Gblocks program [ 52] for each of protein-coding loci of all species examined and then subjected to subsequent phylogenetic analyses.

Segments of these sequences aligned inside highly conserved and conserved blocks of the resulting alignment would correspond to the exons and introns of the searched genes, respectively.