Sentence examples for block the alignment from inspiring English sources

To achieve this, we process the set of blocks as follows: for each block, the alignment information is used to calculate a bidirectional mapping between the coordinate system of the SuperGenome and the original coordinates of each input genome contained in the block.

(ii) Delete the worst-fitting aligned pair that appears at the end of a 'matched block' in the alignment, and force the deleted pair of residues to be unaligned.

The score of a syntenic global alignment is the sum of the values of each match, mismatch, gap and unconserved block in the alignment.

Then, the longest conserved block from the alignment is extracted to form a pk model for each dataset.

The annotation file provides detailed information including chromosome localization, transcription direction, blockCount (number of blocks in the alignment) and blockSizes (comma-separated list of sizes of each block).

Comparisons of computational speed with respect to the literature is somehow difficult to infer since (1) not every work declare computational speed, (2) only isolated blocks of the alignment chain are usually considered (e.g. feature extraction) instead of the entire pipeline, (3) hardware obsolescence.

Gblocks was used to extract the conserved blocks in the alignment.

Each domain, including the KLF-DBD, can be distinguished as separate blocks within the alignment (Supplementary Material online).

Most of the separated blocks in the alignment are associated with integrases and/or IS elements on at least one of their borders.

For each block, b in the alignment containing nb sequences and mb columns, the ith column of the block is assigned a score Cbi = 1 if all the residues in the column are aligned correctly, otherwise Cbi = 0.

Next, conserved blocks of the alignments were selected using Gblocks v.0.91b56 with default settings except for the minimum length of a block that was set to 5 and gap positions in half of the sequences were allowed.