Sentence examples similar to blast seeds from inspiring English sources

For example, the 11-weight BLAST seed saves 10% of the seed hashes compared with the 7-weight blast seed with the cost of 1.8% missing of the true positives.

Otherwise, repeat Steps 1 to 3 with the following modifications: (i) PSI-BLAST replaces BLAST, seeded (-B option) with the cleaned profile from Step 2 and (ii) profile scores (PSSM) replace BLOSUM62 scores (for HSP removal).

Mcm8 and Mcm9 homologues were checked by using both BLASTp and tBLASTn searches in BLAST options of the respective genome projects (listed in Additional file 6), with putative Mcm8 and Mcm9 protein sequences of closely related taxa as a BLAST seed for these sub-analyses.

In a voicemail, McDonough said the area looked like it had been hydro-seeded, or sowed by blasting seeds and mulch, as a way to control dust and to keep more flammable plants from coming up.

The final search method, named PSU used the same construction procedure as POU except that the SCOP sequences associated with SUPERFAMILY models were used as PSI-BLAST seeds instead of profile consensus sequences.

The benchmark experiment was PSI-BLAST seeded with the native alignment (N sequences).

PSI-BLAST seeded with human C9ORF72 converged on 103 sequences including some in protists, indicating that C9ORF72 was present in the last common eukaryotic ancestor (Supplementary Fig. S1A).

"You don't use the end of the hose and blast those seeds with water," Ms. Smith said.

OMBlast uses a BLAST-like seed-and-extension approach to aligning molecules to the reference.

For example, a PSI-Blast search seeded with EutB of Salmonella enterica recovers EutB of Vibrio alginolyticus in the first iteration with an e-value of 7e-151.

To unravel the provenance and relationships of the MORC family, we initiated sequence profile searches using the PSI-BLAST program seeded with eukaryotic MORC proteins.