Sentence examples for bits for each motif from inspiring English sources

However, since we need n fixed bits for each motif to store its bit vector, this is not efficient if there are many sequences, and if a motif occurs only in a small number of sequences, which leads to a sparse bit vector.

The information content of our motif is 13.14 bits compared to 9.64 bits for the TRANSFAC motif (see Methods section for details of calculation).

For each motif, CentriMo finds an optimal score above the minimum threshold 5 bits at which to call motifs. 1 kbp sequences centered on DNase-seq peak summits in SEs or TEs were extracted from the hg19 reference genome as input sequences to CentriMo.

We speculate that the threshold of 9 bits for the 5'ss motif score is too high, and the fraction of U12-type introns among AT-AC introns would actually be larger than the present estimates.

Third, the occurrences of each motif within each bigger time window are counted and their frequency of occurrence is used to calculate one Shannon Entropy value for each motif.

The yellow-black heat map shows k-mer scores for each motif (top margin).

k-mer scores were calculated using position probability matrices (PPM) for each motif and the following formula.

For each motif, enrichment is proportional to the Z statistic obtained from semiparametric generalized additive logistic modeling (see Methods).

Phrase duration was measured for each motif.

For each motif width, we got the top 50 enriched motifs as candidate significant motifs.

For TFBS consensus motifs of variable length, separate matrices were constructed for each motif length.