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The open source software R 2.12.0 64 bit version was used for all statistical analysis.
The Amazon machine image (AMI) used to perform this benchmark is available on: http://s3.amazonaws.com/tcoffee-machine-x32-1.0.1/ (32 bit version) and http://s3.amazonaws.com/tcoffee-machine-x64-1.0.1/ (64 bit version).
We evaluated the free 32 bit version, which allowed us to use it only on dataset I.
GEMS is currently configured to work with the ActiveTwo System (BioSemi, Amsterdam), which generates data files in a 24 bit version of the European Data Format (.bdf).bdf
UBlast6 fails to run on this dataset because it runs out of memory, likely due to limitations of the academic 32 bit version.
All the simulations were performed using the library survival and the functions qnorm and runif from the statistical software R2.15.2, 64 bit version, [ 11].
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Likewise, the 64-bit version of Windows 7 needs the 64-bit version of the codec installed.
If you have the 32-bit version of Windows 7, you need to confirm you've installed the 32-bit version of the codec.
Microsoft has instructions for switching to the 32-bit version of the browser.
Microsoft already offers a 64-bit version of Windows for the Itanium processor.
The better Windows 7 models will have the 64-bit version loaded, and 4GB of memory.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com