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Fatty acid biosynthesis is the process by which acetyl-CoA is used to generate acyl moieties that are used as components of cellular membranes, signaling molecules, and molecules that store energy (e.g., seed oils) [ 40].
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'Biosynthesis' is the most frequent process associated with increased gene expression by its appearance in 15 of the 23 tissues.
Changing the parameters for statistical tests and multiple testing corrections to Benjamini-Hochberg false discovery rate (FDR) [ 34] and hypergeometric test did not change the results (Additional File 4), suggesting vitamin B6 biosynthesis is the only significant biological process affected by SPS1 knockdown at the early stage.
The first committed step in the process of Cars biosynthesis is the condensation of two geranylgeranyl diphosphate (GGPP) molecules to produce 15-cis phytoene, which is catalyzed by phytoene synthase (PSY) (Liu et al. 2015; Nisar et al. 2015).
Among the 28 transmitting genes whose mRNAs moved into both graft partners in the reciprocal grafts, amine and nitrogen compound biosynthesis were the two processes over-represented.
Moreover, GO analysis showed that protein biosynthesis was the most downregulated biological process term.
For example, cholesterol biosynthesis was the most significantly enriched process in KLF6 coexpression network and was also detected by GSEA as one of the most enriched processes in T cells from psoriasis patients.
Grain development is the process of starch biosynthesis and accumulation in endosperm cells.
However, because PG biosynthesis is a process involving multi-enzyme complexes for which the assembly is tightly regulated [ 69], it is not unlikely that also protein glycosylation would act as an additional regulatory layer in this structural complex formation.
Since sucrose biosynthesis is a process regulated by calcium, CDPKs and SnRKs, the genes differentially expressed observed in the high Brix genotypes may all contribute and act as critical control points in sucrose accumulation in this grass.
Flavonoid biosynthesis is one process most impaired by defoliation in berries but the outcome seems dependent on the timing of defoliation and on the genotype [ 6, 7, 19].
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